Anthony Fodor

Fodor, Anthony
Bioinformatics 361
Presonal Webpage:
Degree Institution: University Of Washington
Degree: Ph.D.
Year Graduated: 1998
  • Hamp TJ, Jones WJ, Fodor AA. The effects of experimental choices and analysis noise on surveys of the rare biosphere. Appl Environ Microbiol 2009. Early access ahead of publication.
  • Sanapareddy N, Hamp TJ, Gonzalez LC, Hilger HA, Fodor AA, Clinton SM. Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing. Appl Environ Microbiol 2009,75:1688-1696.
  • Fodor AA and Aldrich RW. Convergent Evolution of Alternative Splices at Domain Boundaries of the BK Channel. Annual Review of Physiology. Vol. 71: 19-36 (Volume publication date March 2009)
  • Reid RW, Fodor AA. Determining gene expression on a single pair of microarrays. BMC Bioinformatics 2008,9:489.
  • Gharaibeh RZ, Fodor AA, Gibas CJ. Background correction using dinucleotide affinities improves the performance of GCRMA. BMC Bioinformatics 2008,9:452.
  • Fodor AA, Tickle TL and Richardson C., Towards the uniform distribution of null p-values on Affymetrix microarrays. Genome Biol. 2007; 8(5): R69
  • Gharaibeh RZ, Fodor AA, Gibas CJ. Using probe secondary structure information to enhance Affymetrix GeneChip background estimates, Comput Biol Chem. 2007 Apr;31(2):92-8. Epub 2007 Feb 20.
  • Pyott SJ, Meredith AL, Fodor AA, V__zquez AE, Yamoah E.N., Aldrich R.W., Cochlear Function in Mice Lacking the BK Channel {alpha}, beta1, or beta4 Subunits, J. Biol. Chem., Vol. 282, Issue 5, 3312-3324, February 2, 2007
  • Meredith AL, Wiler SW, Miller BH, Takahashi JS, Fodor AA, Ruby NF, Aldrich RW, BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output, Nature Neuroscience, 9, 1041-1049, 2006
  • Fodor A.A., Aldrich R.W. Statistical Limits to the Identification of Ion Channel Domains by Sequence Similarity. JGP 127(6), 755-766, 2006
  • Fodor A.A., Aldrich RW. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. Proteins: Structure, Function and Bioinformatics. 2004 Aug 1;56(2):211-21.
  • Dekker JP, Fodor A.A., Aldrich RW, Yellen G. A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments. Bioinformatics. 2004 Jul 10;20(10):1565-72.
  • Fodor A.A., Aldrich RW. On evolutionary conservation of thermodynamic coupling in proteins. Journal of Biological Chemistry. 2004 Apr 30;279(18):19046-50.


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